Welcome to MGT’s documentation!

Contents:

• MGT overview
  • Hierarchical inconsistency
  • References
• MGTdb website features
  • Navigating the website
  • Account features
• Data visualisation, download and export
  • Tabular
  • Interactive graphics
  • Report
  • Downloads
• Generating alleles file locally
  • Installation
  • Quickstart
  • Inputs
  • Outputs
  • Parameters
  • Examples
• Setting up a local application
  • Required software
  • Setting up databases and website
  • Running the website
• Analysis pipeline
  • Reads to Alleles
  • Alleles to MGT types
• Database schema

Indices and tables

• Index

• Module Index

• Search Page